[esip-semantictech] Importing SWEET into Protege

[brandon whitehead]

Hi All,

Thanks for following up, Lewis.

I have been getting the following error when trying to load
'http://sweetontology.net':

[Fatal Error] :1:50: White spaces are required between publicID and
systemID.

I've been digging around in my protege log file, but it doesn't
actually show up there (the previous output is from the command line).

For further context, the page successfully redirects if I hit it in a
browser.  If I try to load one of the ontology files, for example
http://sweetontology.net/humanAgriculture, in a browser it pushes me to
the COR page as expected.  I can curl the URL and get a valid response
(full turtle file), but if I try the same thing via Protege (loading
that specific ttl file via URL instead of a local copy) I get a 403
error --- the same issue Lewis described.

These results are identical using using protege 5.5, protege 5.2, and
potege 5.2 'platform independent version'.

Also, the ontologies load from a local copy in protege (all versions
listed previously) as well as TopBraid Composer 5.3.  However, in TBC
the base class name for the file (i.e. humanAgriculture.ttl) shows up
as an openrdf error link, which I have not seen before.  ( i.e.
org.openrdf.RDFParse.../error#(n) )

I'm not sure what to test next.  I would assume the 403 error needs to
be addressed before the parser can be tested.

Thoughts?

Cheers,
/Brandon

On Mon, 2019-07-15 at 17:58 +0000, Mcgibbney, Lewis J (398M) wrote:
> Hi Folks,
> Does anyone have advice or is anyone actually able to import SWEET
> into Protégé? I have not used Protégé in quite a while and recently
> encountered issues.
> With Protégé 5.5.0 I am getting 403 errors when attempting to do the
> following
>  
> File > Open from URL > this results in a HTTP 403 error
>  
> We do ofcourse have the redirection setup between all
> sweetontology.net resources to the actual resource within COR.
>  
> Any suggestions? Surely someone has been able to do this recently.
> I’m also going to head over to the Protégé mailing list and ask over
> there.
> Thanks
>  
> Dr. Lewis John McGibbney Ph.D., B.Sc.(Hons)
> Data Scientist III
> Computer Science for Data Intensive Applications Group (398M)
> Instrument Software and Science Data Systems Section (398)
> Jet Propulsion Laboratory
> California Institute of Technology 
> 4800 Oak Grove Drive
> Pasadena, California 91109-8099
> Mail Stop : 158-256C
> Tel:  (+1) (818)-393-7402
> Cell: (+1) (626)-487-3476
> Fax:  (+1) (818)-393-1190
> Email: lewis.j.mcgibbney at jpl.nasa.gov
> ORCID: orcid.org/0000-0003-2185-928X
>  
>            
>  
>  Dare Mighty Things